Index

Symbols

``_input_ports`` modules, [1], [2] ``_modules`` packages, [1] ``_output_ports`` modules, [1], [2] ``compute`` modules ``ConfigurationObject``

``filePool`` packages ``identifier`` packages, [1] ``ModuleError`` modules, [1], [2] ``name`` packages, [1] ``version`` packages, [1]

_

_input_ports (vistrails.core.modules.vistrails_module.Module attribute) _output_ports (vistrails.core.modules.vistrails_module.Module attribute)

_settings (vistrails.core.modules.vistrails_module.Module attribute)

A

abstract modules abstract (vistrails.core.modules.config.ModuleSettings attribute) adding connections modules, [1] ports spreadsheet sheets tags adding parameters parameter exploration aliases mashups

analogy visual diff animation, [1] annotate() (vistrails.core.modules.vistrails_module.Module method) annotations versions

B

basic modules batch mode

builder, [1] by example queries

C

caching modules cardinality ports cells creating, spreadsheet positioning, spreadsheet spreadsheet, [1] web browser, spreadsheet center changing parameters check_input() (vistrails.core.modules.vistrails_module.Module method) close vistrail color modules color (vistrails.core.modules.config.ModuleSettings attribute) columns spreadsheet command line arguments comparing versions CompoundInputPort (class in vistrails.core.modules.config) CompoundOutputPort (class in vistrails.core.modules.config) compute() (vistrails.core.modules.vistrails_module.Module method)

configuration modules packages configuration directory configure_widget (vistrails.core.modules.config.ModuleSettings attribute) configuring aliases mashups connecting modules connections adding definition selecting connectivity ports constant_signature (vistrails.core.modules.config.ModuleSettings attribute) constant_widget (vistrails.core.modules.config.ModuleSettings attribute) constant_widgets (vistrails.core.modules.config.ModuleSettings attribute) ConstantWidgetConfig (class in vistrails.core.modules.config) control flow parameter exploration control flow assistant creating spreadsheet cells customization modules

D

database, [1] issues opening from saving to setup default (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.InputPortItem attribute) default values ports spreadsheet defaults (vistrails.core.modules.config.CompoundInputPort attribute) definition connections modules vistrail deleting modules ports spreadsheet sheets tags dependencies packages

depth (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute) diff see versions, comparing differences parameters directions parameter exploration docking spreadsheet sheets docstring (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute) dynamic modules

E

editing spreadsheet modes entry_type (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.InputPortItem attribute) entry_types (vistrails.core.modules.config.CompoundInputPort attribute)

execute exploring parameters, [1]

F

force_get_input() (vistrails.core.modules.vistrails_module.Module method) force_get_input_list() (vistrails.core.modules.vistrails_module.Module method)

fringe (vistrails.core.modules.config.ModuleSettings attribute) from a database open

G

get_input() (vistrails.core.modules.vistrails_module.Module method) get_input_list() (vistrails.core.modules.vistrails_module.Module method) ghost_namespace (vistrails.core.modules.config.ModuleSettings attribute) ghost_package (vistrails.core.modules.config.ModuleSettings attribute)

ghost_package_version (vistrails.core.modules.config.ModuleSettings attribute) grouping modules groups subworkflows, [1]

H

has_input() (vistrails.core.modules.vistrails_module.Module method) hide_descriptor (vistrails.core.modules.config.ModuleSettings attribute)

hide_namespace (vistrails.core.modules.config.ModuleSettings attribute) history

I

image spreadsheet saving InputPort (class in vistrails.core.modules.config) InputPortItem (class in vistrails.core.modules.config) interactive spreadsheet modes

is_root (vistrails.core.modules.config.ModuleSettings attribute) issues database items (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute)

L

label (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.InputPortItem attribute) labels modules ports labels (vistrails.core.modules.config.CompoundInputPort attribute) layout spreadsheet left_fringe (vistrails.core.modules.config.ModuleSettings attribute)

legend list of examples modules location view log

M

mashups aliases configuring aliases naming saving setting parameters max_conns (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute) merging methods min_conns (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute)

modes editing, spreadsheet interactive, spreadsheet spreadsheet Module (class in vistrails.core.modules.vistrails_module) ModuleError (class in vistrails.core.modules.vistrails_module) modules ``ModuleError``, [1], [2] ``_input_ports``, [1], [2] ``_output_ports``, [1], [2] ``compute`` abstract adding, [1] basic caching color configuration connecting customization definition deleting dynamic grouping labels list of examples namespaces parameters ports selecting shape subworkflows, [1] ungrouping visibility widgets writing new ModuleSettings (class in vistrails.core.modules.config)

N

name (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.ModuleSettings attribute) (vistrails.core.modules.config.OutputPort attribute) namespace (vistrails.core.modules.config.ModuleSettings attribute) namespaces modules naming mashups

navigating versions non-interactive mode notes

O

open from a database vistrail opening from database optional ports optional (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute)

ordering spreadsheet sheets OutputPort (class in vistrails.core.modules.config) OutputPortItem (class in vistrails.core.modules.config)

P

package upgrades package (vistrails.core.modules.config.ModuleSettings attribute) package_version (vistrails.core.modules.config.ModuleSettings attribute) packages ``_modules``, [1] ``filePool`` ``identifier``, [1] ``name``, [1] ``version``, [1] configuration dependencies ports temporary files wrapping command-line tools palette views pan parameter exploration, [1] adding parameters control flow directions running setting values spreadsheet, [1], [2], [3]

parameter widgets parameters changing differences exploring, [1] modules ParamExpWidgetConfig (class in vistrails.core.modules.config) ports, [1] adding cardinality connectivity default values deleting labels modules optional packages shape signatures variant positioning spreadsheet cells PythonSource

Q

queries, [1] by example textual viewing results

QueryWidgetConfig (class in vistrails.core.modules.config)

R

redo, [1] RichTextCell spreadsheet right_fringe (vistrails.core.modules.config.ModuleSettings attribute)

rows spreadsheet running parameter exploration

S

save vistrail saving image, spreadsheet mashups spreadsheet saving parameter exploration spreadsheet saving to database search refine select selecting connections modules server, [1] set_output() (vistrails.core.modules.vistrails_module.Module method) setting parameters mashups

setting values parameter exploration setup database shape modules ports shape (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute) sheets adding, spreadsheet deleting, spreadsheet docking, spreadsheet ordering, spreadsheet signature (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.InputPortItem attribute) (vistrails.core.modules.config.ModuleSettings attribute) (vistrails.core.modules.config.OutputPort attribute) (vistrails.core.modules.config.OutputPortItem attribute) signatures ports sort_key (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.CompoundOutputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.OutputPort attribute) spreadsheet, [1] RichTextCell cells, [1] cells creating cells positioning cells web browser columns default values layout modes modes editing modes interactive parameter exploration, [1], [2], [3] rows saving saving image saving parameter exploration sheets adding sheets deleting sheets docking sheets ordering virtual cell subworkflows groups, [1] modules, [1]

T

tab tags adding deleting upgrading temporary files packages

textual queries toolbar

U

undo, [1] ungrouping modules

upgrades package upgrading tags

V

values (vistrails.core.modules.config.CompoundInputPort attribute) (vistrails.core.modules.config.InputPort attribute) (vistrails.core.modules.config.InputPortItem attribute) variant ports version (vistrails.core.modules.config.ModuleSettings attribute) versions, [1] annotations comparing navigating viewing view location viewing versions viewing results queries views palette virtual cell spreadsheet visibility modules vistrail close definition open save

VisTrails VTK modules vistrails.core.modules.config (module) vistrails.core.modules.config.CIPort (class in vistrails.core.modules.config) vistrails.core.modules.config.COPort (class in vistrails.core.modules.config) vistrails.core.modules.config.IPItem (class in vistrails.core.modules.config) vistrails.core.modules.config.IPort (class in vistrails.core.modules.config) vistrails.core.modules.config.OPItem (class in vistrails.core.modules.config) vistrails.core.modules.config.OPort (class in vistrails.core.modules.config) vistrails.core.modules.vistrails_module (module) visual diff analogy see versions, comparing vtkInteractionHandler

W

web browser spreadsheet cells widget (vistrails.core.modules.config.ConstantWidgetConfig attribute) (vistrails.core.modules.config.ParamExpWidgetConfig attribute) (vistrails.core.modules.config.QueryWidgetConfig attribute) widget_type (vistrails.core.modules.config.ConstantWidgetConfig attribute) (vistrails.core.modules.config.ParamExpWidgetConfig attribute) (vistrails.core.modules.config.QueryWidgetConfig attribute) widget_use (vistrails.core.modules.config.ConstantWidgetConfig attribute) (vistrails.core.modules.config.ParamExpWidgetConfig attribute) (vistrails.core.modules.config.QueryWidgetConfig attribute) widgets modules

workflow wrapping command line tools using package CLTools wrapping command-line tools packages writing new modules

Z

zoom