UserContributedPackages

Please note that the packages below are created and maintained outside of the VisTrails repository. Installation of them requires extracting them to the appropriate userpackages directory. Many of the packages listed below are incomplete or works in progress. Please take that into consideration during their use.

User Packages	Description	Package Name	Primary Contact	Download
teem	Teem is a coordinated group of libraries for representing, processing, and visualizing scientific raster data.	teem	Carlos Scheidegger - cscheid 'at' sci.utah.edu	teem.tar.gz
NumSciPy	NumSciPy wraps some of the functionality in the numpy and scipy packages (http://www.scipy.org). This package is currently under development.	NumSciPy	Erik W. Anderson - eranders 'at' sci.utah.edu	NumSciPy.tar.gz
Protein Data Bank	Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics	ProteinDataBank	Erik Anderson - eranders 'at' sci.utah.edu, Carlos Scheidegger - cscheid 'at' sci.utah.edu	PDB.tar.gz
ITK	Wrapping of the Insight ToolKit available from KitWare. This is an incomplete set of packages and work is being done to incorporate more of the ITK functionality into the wrappers. DICOM reading is now supported through ITK's GDCMReader module set. This requires CableSWIG and WrapITK.	itk	Erik Anderson - eranders 'at' sci.utah.edu	ITK.tar.gz
Matlab	Modules allowing access to a local Matlab engine and interpreter. This is an incomplete set of packages and work is being done to incorporate more functionality into the wrappers. This requires Matlab and MLabWrap.	Matlab	Erik Anderson - eranders 'at' sci.utah.edu	Matlab.tar.gz
Trimesh2	Modules allowing access to the trimesh2 library. It requires access to the trimesh2 executables (notably, mesh_filter).	trimesh2	Carlos Scheidegger - cscheid 'at' sci.utah.edu	trimesh2.py
Metro	Modules allowing access to VCG's metro tool. It requires access to the metro executable.	trimesh2	Carlos Scheidegger - cscheid 'at' sci.utah.edu	metro.py
LIBSVM	Package allowing use of libsvm train and predict command line tools	libsvm	Emanuele Santos - emanuele 'at' sci.utah.edu	vistrails_libsvm.tar.gz
OPAL	Package allowing use of OPAL web services. More Information	opalWebServices	Jane Ren - j2ren 'at' ucsd.edu	WebServices.tar.gz WebServiceHelpers.tar.gz

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• remoteLogin

| Package wraps ssh and scp functionality for remote command execution and file management. The userpackage requires the python library pExpect to communicate with the remote host. | remoteLogin | Joel Daniels - jdaniels 'at' sci.utah.edu | remoteLogin.tar.gz