Difference between revisions of "UserContributedPackages"

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(New page: Please note that the packages below are created and maintained outside of the VisTrails repository. Installation of them requires extracting them to the appropriate userpackages directory...)
 
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|{{Hl4}}|'''Primary Contact'''
|{{Hl4}}|'''Primary Contact'''
|{{Hl4}}|'''Download'''
|{{Hl4}}|'''Download'''
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* teem
| Teem is a coordinated group of libraries for representing, processing, and visualizing scientific raster data.
| teem
| Carlos Scheidegger - cscheid 'at' sci.utah.edu
| {{targz
    |link=http://www.sci.utah.edu/~cscheid/software/vistrails/teem.tar.gz
    |text=teem.tar.gz}}
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* NumSciPy
| NumSciPy wraps some of the functionality in the numpy and scipy packages (http://www.scipy.org).  This package is currently under development.
| NumSciPy
| Erik W. Anderson - eranders 'at' sci.utah.edu
| {{targz
    |link=http://www.sci.utah.edu/~eranders/packages/NumSciPy.tar.gz
    |text=NumSciPy.tar.gz}}
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| Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics
| Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics
| ProteinDataBank
| ProteinDataBank
| Erik Anderson - eranders 'at' sci.utah.edu
| Erik Anderson - eranders 'at' sci.utah.edu, Carlos Scheidegger - cscheid 'at' sci.utah.edu
| http://www.sci.utah.edu/~eranders/packages/PDB.tar.gz
| {{targz
    |link=http://www.sci.utah.edu/~cscheid/software/vistrails/PDB.tar.gz
    |text=PDB.tar.gz}}
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| itk
| itk
| Erik Anderson - eranders 'at' sci.utah.edu
| Erik Anderson - eranders 'at' sci.utah.edu
| http://www.sci.utah.edu/~eranders/packages/ITK.tar.gz
| {{targz
    |link=http://www.sci.utah.edu/~eranders/packages/ITK.tar.gz
    |text=ITK.tar.gz}}
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| Matlab
| Matlab
| Erik Anderson - eranders 'at' sci.utah.edu
| Erik Anderson - eranders 'at' sci.utah.edu
| http://www.sci.utah.edu/~eranders/packages/Matlab.tar.gz
| {{targz
    |link=http://www.sci.utah.edu/~eranders/packages/Matlab.tar.gz
    |text=Matlab.tar.gz}}
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| trimesh2
| trimesh2
| Carlos Scheidegger - cscheid 'at' sci.utah.edu
| Carlos Scheidegger - cscheid 'at' sci.utah.edu
| http://www.sci.utah.edu/~cscheid/software/vistrails/trimesh2.py
| {{python
    |link=http://www.sci.utah.edu/~cscheid/software/vistrails/trimesh2.py
    |text=trimesh2.py}}
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| trimesh2
| trimesh2
| Carlos Scheidegger - cscheid 'at' sci.utah.edu
| Carlos Scheidegger - cscheid 'at' sci.utah.edu
| http://www.sci.utah.edu/~cscheid/software/vistrails/metro.py
| {{python
    |link=http://www.sci.utah.edu/~cscheid/software/vistrails/metro.py
    |text=metro.py}}
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* LIBSVM
| Package allowing use of libsvm train and predict command line tools
| libsvm
| Emanuele Santos - emanuele 'at' sci.utah.edu
| {{targz
    |link=http://www.sci.utah.edu/~emanuele/software/vistrails_libsvm.tar.gz
    |text=vistrails_libsvm.tar.gz}}
|-
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* OPAL
| Package allowing use of [http://www.nbcr.net/software/opal/ OPAL] web services. [https://www.nbcr.net/pub/wiki/index.php?title=VisTrails More Information]
| opalWebServices
| Jane Ren - j2ren 'at' ucsd.edu
| {{targz
    |link=http://www.nbcr.net/vistrails/opalWebServices.tar.gz
    |text=WebServices.tar.gz}}
{{targz
    |link=http://www.nbcr.net/vistrails/opalWebServiceHelpers.tar.gz
    |text=WebServiceHelpers.tar.gz}}
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|-
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* remoteLogin
| Package wraps ssh and scp functionality for remote command execution and file management.  The userpackage requires the python library pExpect to communicate with the remote host.
| remoteLogin
| Joel Daniels - jdaniels 'at' sci.utah.edu
| {{targz
    |link=http://vgc.poly.edu/~jdaniels/userpackages/remoteLogin.tar.gz
    |text=remoteLogin.tar.gz}}
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|-
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* EO4VisTrails
| Adds spatial and temporal data access, data pre-processing and data analysis capabilities. This includes cloud, analytics and standards-based spatial data access.
| eo4vistrails
| Derek Hohls - dhohls 'at' csir dot co dot za
| [http://ict4eo.github.io/eo4vistrails/ ict4eo.github.io/eo4vistrails]
|}
|}

Latest revision as of 14:49, 9 April 2014

Please note that the packages below are created and maintained outside of the VisTrails repository. Installation of them requires extracting them to the appropriate userpackages directory. Many of the packages listed below are incomplete or works in progress. Please take that into consideration during their use.

User Packages Description Package Name Primary Contact Download
  • teem
 Teem is a coordinated group of libraries for representing, processing, and visualizing scientific raster data. teem Carlos Scheidegger - cscheid 'at' sci.utah.edu Targz.png teem.tar.gz
  • NumSciPy
 NumSciPy wraps some of the functionality in the numpy and scipy packages (http://www.scipy.org). This package is currently under development. NumSciPy Erik W. Anderson - eranders 'at' sci.utah.edu Targz.png NumSciPy.tar.gz
  • Protein Data Bank
 Package allowing simple processing of Protein Databank files (.pdb) to extract mundane statistics ProteinDataBank Erik Anderson - eranders 'at' sci.utah.edu, Carlos Scheidegger - cscheid 'at' sci.utah.edu Targz.png PDB.tar.gz
  • ITK
 Wrapping of the Insight ToolKit available from KitWare. This is an incomplete set of packages and work is being done to incorporate more of the ITK functionality into the wrappers. DICOM reading is now supported through ITK's GDCMReader module set. This requires CableSWIG and WrapITK. itk Erik Anderson - eranders 'at' sci.utah.edu Targz.png ITK.tar.gz
  • Matlab
 Modules allowing access to a local Matlab engine and interpreter. This is an incomplete set of packages and work is being done to incorporate more functionality into the wrappers. This requires Matlab and MLabWrap. Matlab Erik Anderson - eranders 'at' sci.utah.edu Targz.png Matlab.tar.gz
  • Trimesh2
 Modules allowing access to the trimesh2 library. It requires access to the trimesh2 executables (notably, mesh_filter). trimesh2 Carlos Scheidegger - cscheid 'at' sci.utah.edu Py_file.png trimesh2.py
  • Metro
 Modules allowing access to VCG's metro tool. It requires access to the metro executable. trimesh2 Carlos Scheidegger - cscheid 'at' sci.utah.edu Py_file.png metro.py
  • LIBSVM
 Package allowing use of libsvm train and predict command line tools libsvm Emanuele Santos - emanuele 'at' sci.utah.edu Targz.png vistrails_libsvm.tar.gz
  • OPAL
 Package allowing use of OPAL web services. More Information opalWebServices Jane Ren - j2ren 'at' ucsd.edu Targz.png WebServices.tar.gz

Targz.png WebServiceHelpers.tar.gz

  • remoteLogin
 Package wraps ssh and scp functionality for remote command execution and file management. The userpackage requires the python library pExpect to communicate with the remote host. remoteLogin Joel Daniels - jdaniels 'at' sci.utah.edu Targz.png remoteLogin.tar.gz
  • EO4VisTrails
 Adds spatial and temporal data access, data pre-processing and data analysis capabilities. This includes cloud, analytics and standards-based spatial data access. eo4vistrails Derek Hohls - dhohls 'at' csir dot co dot za ict4eo.github.io/eo4vistrails
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