Publications, Tutorials and Presentations

Publications

VisMashup: Streamlining the Creation of Custom Visualization Applications (by Emanuele Santos, Lauro Lins, James Ahrens, Juliana Freire and Claudio Silva). IEEE Trans. Vis. Comp. Graph (Proceedings of IEEE Vis 2009), 15(6), pp. 1539-1546, 2009. (video)

Using Workflow Medleys to Streamline Exploratory Tasks (by Emanuele Santos, David Koop, Huy T. Vo, Erik Anderson, Juliana Freire, and Claudio T. Silva). In 21st International Conference on Scientific and Statistical Database Management (SSDBM), pp. 292-301, 2009.

A First Study on Strategies for Generating Workflow Snippets (by Tommy Ellkvist, Lena Stromback, Lauro Lins, and Juliana Freire) In ACM SIGMOD Intenational Workshop on Keyword Search on Structured Data (KEYS), 2009.

Using Mediation to Achieve Provenance Interoperability (by Tommy Ellkvist, David Koop, Juliana Freire, Claudio T. Silva, and Lena Stromback) In IEEE International Workshop on Scientific Workflows, 2009.

VisComplete: Automating Suggestions for Visualization Pipelines (by David Koop, Carlos E. Scheidegger, Steven P. Callahan, Huy T. Vo, Juliana Freire and Claudio T. Silva). In IEEE Transactions on Visualization and Computer Graphics, 14(6), pp. 1691-1698, 2008. (video)

End-to-End eScience: Integrating Workflow, Query, Visualization, and Provenance at an Ocean Observatory (by Bill Howe, Peter Lawson, Renee Bellinger, Juliana Freire, Erik Anderson, Emanuele Santos, Carlos E. Scheidegger, Antonio Baptista, and Claudio T. Silva). In IEEE International Conference on e-Science, 2008.

Using Mediation to Achieve Provenance Interoperability (by Tommy Ellkvist, David Koop, Juliana Freire, Claudio T. Silva, and Lena Stromback). In IEEE International Conference on e-Science, 2008.

Provenance and Scientific Workflows: Challenges and Opportunities (by Susan Davidson and Juliana Freire). In ACM SIGMOD, pp. 1345-1350, 2008. (Tutorial Wiki)

Provenance for Computational Tasks: A Survey (by Juliana Freire, David Koop, Emanuele Santos, and Claudio T. Silva). In IEEE Computing in Science & Engineering, 10(3), pp. 11-21, 2008.

Scientific Exploration in the Era of Ocean Observatories (by Antonio Baptista, Bill Howe, Juliana Freire, David Maier, and Claudio T. Silva). In IEEE Computing in Science & Engineering, 10(3), pp. 53-58, 2008.

Examining Statistics of Workflow Evolution Provenance: A First Study (by Lauro Lins, David Koop, Erik Anderson, Steven P. Callahan, Emanuele Santos, Carlos E. Scheidegger, Juliana Freire, and Claudio T. Silva). In Proceedings of International Conference on Scientific and Statistical Database Management (SSDBM), 2008.

A First Study on Clustering Collections of Workflow Graphs (by E. Santos, L. Lins, J. P. Ahrens, J. Freire, C. Silva). In Proceedings of the International Provenance and Annotation Workshop, 2008.

Using Provenance to Support Real-Time Collaborative Design of Workflows (by T. Ellkvist, David Koop, E. Anderson, J. Freire, C. Silva). In Proceedings of the International Provenance and Annotation Workshop, 2008

Querying and Re-Using Workflows with VisTrails (by Carlos E. Scheidegger, David Koop, Juliana Freire, and Claudio T. Silva). In Proceedings of ACM SIGMOD International Conference on Management of Data, pp. 1251-1254, 2008.

Towards Enabling Social Analysis of Scientific Data (by Juliana Freire and Claudio T. Silva). In CHI Social Data Analysis Workshop, 2008.

Tackling the Provenance Challenge One Layer at a Time (by Carlos E. Scheidegger, David Koop, Emanuele Santos, Huy T. Vo, Steven P. Callahan, Juliana Freire, and Claudio T. Silva). In Concurrency and Computation: Practice and Experience, 20(5), pp. 473-483, 2008.

Provenance for Visualizations: Reproducibility and Beyond (by Claudio Silva, Juliana Freire and Steven Callahan). IEEE Computing in Science & Engineering, 9(5):82-29, 2007. The vistrail to reproduce the images in the paper is available at http://www.vistrails.org/index.php/CiSE

Querying and Creating Visualizations by Analogy (by Carlos E. Scheidegger, Huy T. Vo, David Koop, Juliana Freire and Claudio T. Silva. IEEE Trans. Vis. Comp. Graph (Proceedings of IEEE Vis 2007) 13(6):1560-1567, 2007. IEEE Vis 2007 Best Paper Award

Managing Rapidly-Evolving Scientific Workflows (by Juliana Freire, Claudio T. Silva, Steven P. Callahan, Emanuele Santos, Carlos E. Scheidegger and Huy T. Vo) Invited paper, in the proceedings of the International Provenance and Annotation Workshop (IPAW), 2006. presentation

Visualization in Radiation Oncology: Towards Replacing the Laboratory Notebook (by Erik W. Anderson, Steven P. Callahan, George T. Y. Chen, Juliana Freire, Emanuele Santos, Carlos E. Scheidegger, Claudio T. Silva and Huy T. Vo) SCI Institute Technical Report, No. UUSCI-2006-17, University of Utah, 2006.

Using Provenance to Streamline Data Exploration through Visualization (by Steven P. Callahan, Juliana Freire, Emanuele Santos, Carlos E. Scheidegger, Claudio T. Silva and Huy T. Vo) SCI Institute Technical Report, No. UUSCI-2006-016, University of Utah, 2006.

Managing the Evolution of Dataflows with VisTrails (by Steven P. Callahan, Juliana Freire, Emanuele Santos, Carlos E. Scheidegger, Claudio T. Silva and Huy T. Vo) IEEE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow) 2006. presentation

VisTrails: Visualization meets Data Management (by Steven P. Callahan, Juliana Freire, Emanuele Santos, Carlos E. Scheidegger, Claudio T. Silva and Huy T. Vo) In Proceedings of ACM SIGMOD 2006. presentation

VisTrails: A Short Tutorial (by Erik W. Anderson, Steven P. Callahan, Juliana Freire, Emanuele Santos, Carlos E. Scheidegger, Claudio T. Silva and Huy T. Vo) Technical Report. University of Utah, 2005.

VisTrails: Enabling Interactive Multiple-View Visualizations (by Louis Bavoil, Steven P. Callahan, Patricia J. Crossno, Juliana Freire, Carlos E. Scheidegger, Claudio T. Silva and Huy T. Vo) In Proceedings of IEEE Visualization, 2005. presentation

Tutorials

Provenance-Enabled Data Exploration and Visualization. (by Emanuele Santos, Claudio Silva, Juliana Freire, Erik Anderson and David Koop) Tutorial presented at VisWeek 2009. Atlantic City, October 2009.

Provenance-Enabled Data Exploration and Visualization with VisTrails (by Juliana Freire and Claudio Silva) Invited tutorial at the SciDAC conference. San Diego, California, July 2009

Streamlining Data Exploration and Visualization through Scientific Workflows and Provenance (by Juliana Freire, Claudio Silva and Emanuele Santos). Tutorial presented at the IEEE eScience 2008 conference. Indianapolis, December 2008.

Provenance and Scientific Workflows: Challenges and Opportunities (by Susan Davidson and Juliana Freire). Tutorial presented at ACM SIGMOD 2008. Vancouver, Canada, June 2008

Visualization and Data Analysis with VisTrails. (by Claudio Silva and Carlos Scheidegger). Tutorial presented at Scientific Discovery through Advanced Computing Program (SciDAC), Seattle, Washington, July 2008

Provenance Management: Challenges and Opportunities. (by Juliana Freire and Claudio Silva) Invited tutorial at the Brazilian Symposium on Databases. Joao Pessoa, Brazil, October 2007

Posters

A poster on VisTrails applications

A poster on VisTrails features

Other

Accompanying webpage for "Edge Transformations for Improving Mesh Quality of Marching Cubes"

| Accompanying video for "Querying and Creating Visualizations by Analogy"