Difference between revisions of "Web Services Examples"
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(New page: =Configuring Web Services in VisTrails= ==Enabling the webServices package== ==Adding web services URLs in VisTrails== =Web Services Demos in VisTrails= ==Data Transformation== ==EMBOSS we...) |
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=Configuring Web Services in VisTrails= | =Configuring Web Services in VisTrails= | ||
==Enabling the | Note: The package named "webServices" is deprecated. Please use the package named "SUDSWebServices" instead. | ||
==Enabling the SUDSWebServices package== | |||
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select SUDSWebServices and click on Enable. | |||
==Adding web services URLs in VisTrails== | ==Adding web services URLs in VisTrails== | ||
=Web Services Demos in | |||
To add the web services URLs to VisTrails, select SUDSWebServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want. | |||
=Web Services Demos= | |||
A set of Bioinformatics and other web services workflows demos are included in the [http://panda.poly.edu:8080/images/WebServicesDemos.zip WebServicesDemos.zip] file. The web services used are specified in the following subsections. | |||
==Data Transformation== | ==Data Transformation== | ||
* http://xml.nig.ac.jp/wsdl/DDBJ.wsdl | |||
==EMBOSS web services== | ==EMBOSS web services== | ||
*http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl | |||
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl | |||
*http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl | |||
*http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl | |||
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl | |||
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl | |||
*http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl | |||
==KEGG web services== | ==KEGG web services== | ||
*http://soap.genome.jp/KEGG.wsdl | |||
==KEGG Search Entities web service== | ==KEGG Search Entities web service== | ||
*http://soap.genome.jp/KEGG.wsdl | |||
*http://phoebus.cs.man.ac.uk:8081/axis/EnsemblListner.jws?wsdl | |||
==ChEBI web service== | |||
*http://www.ebi.ac.uk/webservices/chebi/webservice?wsdl | |||
==NOAA web services== | |||
*http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl | |||
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl | |||
*http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl | |||
=Web Services Demos Guide= | |||
If you would like to learn more about creating workflows that use web services, download this [http://panda.poly.edu:8080/images/WebServicesDemosGuide.zip guide]. Note that it still uses the old web service package. | |||
Latest revision as of 19:51, 2 December 2021
Configuring Web Services in VisTrails
Note: The package named "webServices" is deprecated. Please use the package named "SUDSWebServices" instead.
Enabling the SUDSWebServices package
The web service package comes disabled in VisTrails, to enable it open the preferences panel (On Windows and Linux, it is located under the Edit Menu, and on the Mac, it is under the VisTrails Menu). Select the tab named Module Packages. On the Disabled packages list, select SUDSWebServices and click on Enable.
Adding web services URLs in VisTrails
To add the web services URLs to VisTrails, select SUDSWebServices on the Enabled packages list and click on configure. A new window will appear and you will be able to add a ';' separated list of web services URLs. Select wsdlList and click on the value field. You can type the web services URLs you want.
Web Services Demos
A set of Bioinformatics and other web services workflows demos are included in the WebServicesDemos.zip file. The web services used are specified in the following subsections.
Data Transformation
EMBOSS web services
- http://www.ebi.ac.uk/soaplab/emboss4/services/edit.seqret.derived?wsdl
- http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.emma.derived?wsdl
- http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_multiple.prettyplot.derived?wsdl
- http://www.ebi.ac.uk/soaplab/emboss4/services/protein_2d_structure.tmap.derived?wsdl
- http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophecy.derived?wsdl
- http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_translation.transeq.derived?wsdl
- http://www.ebi.ac.uk/soaplab/emboss4/services/nucleic_profiles.prophet.derived?wsdl
KEGG web services
KEGG Search Entities web service
ChEBI web service
NOAA web services
- http://opendap.co-ops.nos.noaa.gov/axis/services/Wind?wsdl
- http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedSixMin?wsdl
- http://opendap.co-ops.nos.noaa.gov/axis/services/WaterLevelVerifiedHourly?wsdl
Web Services Demos Guide
If you would like to learn more about creating workflows that use web services, download this guide. Note that it still uses the old web service package.